If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ), 'gf_id' => 'HOM05D000994', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000994' ), 'data_identifier' => 'HOM05D000994', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000994', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02080' => 'bna', 'A01p27660' => 'bna', 'A02p27260' => 'bna', 'A02p44460' => 'bna', 'A03p64640' => 'bna', 'A03p64650' => 'bna', 'A04p18140' => 'bna', 'A06p06280' => 'bna', 'A07p17300' => 'bna', 'A07p29050' => 'bna', 'A08p34480' => 'bna', 'A09p09870' => 'bna', 'A09p56770' => 'bna', 'Aa31LG1G15190' => 'aar', 'Aa31LG1G5450' => 'aar', 'Aa31LG2G11260' => 'aar', 'Aa31LG6G13630' => 'aar', 'Aa31LG7G13090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.247' => 'aag', 'Actinidia11643' => 'ach', 'Actinidia12105' => 'ach', 'Actinidia19158' => 'ach', 'Actinidia23143' => 'ach', 'Actinidia23821' => 'ach', 'Actinidia29842' => 'ach', 'Actinidia34515' => 'ach', 'Ah.03g139690' => 'amhyb', 'Ah.08g217580' => 'amhyb', 'Ah.15g094710' => 'amhyb', 'AL1G20100' => 'aly', 'AL1G67190' => 'aly', 'AL4G13810' => 'aly', 'AL7G12092' => 'aly', 'AL7G14170' => 'aly', 'AL7G14180' => 'aly', 'AL8G18660' => 'aly', 'AL8G44840' => 'aly', 'Aqoxy2G00631' => 'aox', 'Aqoxy307s001' => 'aox', 'Aqoxy3G00559' => 'aox', 'Aqoxy5G01706' => 'aox', 'Aqoxy6G01014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B68A3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECM0DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4GRZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9UWEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3MAB1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZ11LQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6GT2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYRK4G' => 'arhy', 'AT1G09575' => 'ath', 'AT1G57610' => 'ath', 'AT2G23790' => 'ath', 'AT4G36820' => 'ath', 'AT5G42610' => 'ath', 'AT5G66650' => 'ath', 'ATR0605G045' => 'atr', 'ATR0733G012' => 'atr', 'ATR1127G150' => 'atr', 'ATR1156G067' => 'atr', 'Atru.chr10.2370_Atru.chr10.2372' => 'acertr', 'Atru.chr10.2373' => 'acertr', 'Atru.chr13.548' => 'acertr', 'Atru.chr3.507' => 'acertr', 'AUR62001371' => 'cqu', 'AUR62003203' => 'cqu', 'AUR62008020' => 'cqu', 'AUR62025587' => 'cqu', 'BcaB02g06730' => 'bca', 'BcaB02g10005' => 'bca', 'BcaB04g20113' => 'bca', 'BcaB04g20169' => 'bca', 'BcaB06g27936' => 'bca', 'BcaB07g29660' => 'bca', 'BcaB07g30611' => 'bca', 'BcaC02g08543' => 'bca', 'BcaC02g08544' => 'bca', 'BcaC02g10712' => 'bca', 'BcaC03g16525' => 'bca', 'BcaC03g18408' => 'bca', 'BcaC04g23145' => 'bca', 'BcaC06g31778' => 'bca', 'BcaC06g33953' => 'bca', 'BcaC06g34727' => 'bca', 'BcaC07g38519' => 'bca', 'BcaC07g40974' => 'bca', 'BcaC09g49533' => 'bca', 'BcaNung03527' => 'bca', 'BcaNung03936' => 'bca', 'BcaNung03941' => 'bca', 'BcaNung04278' => 'bca', 'BcaNung04281' => 'bca', 'BolC1t00218H' => 'bol', 'BolC1t03509H' => 'bol', 'BolC2t10397H' => 'bol', 'BolC2t12545H' => 'bol', 'BolC4t24097H' => 'bol', 'BolC4t26872H' => 'bol', 'BolC5t29514H' => 'bol', 'BolC7t43048H' => 'bol', 'BolC7t46618H' => 'bol', 'BolC7t46621H' => 'bol', 'BolC7t46622H' => 'bol', 'BolC8t48929H' => 'bol', 'BolC8t51542H' => 'bol', 'BolC9t54063H' => 'bol', 'BraA01t00197Z' => 'bra', 'BraA01t02905Z' => 'bra', 'BraA02t07749Z' => 'bra', 'BraA02t09363Z' => 'bra', 'BraA03t15528Z' => 'bra', 'BraA04t17432Z' => 'bra', 'BraA06t23838Z' => 'bra', 'BraA07t29456Z' => 'bra', 'BraA07t30545Z' => 'bra', 'BraA09t36634Z' => 'bra', 'BraA09t41067Z' => 'bra', 'C01p02260' => 'bna', 'C01p35500' => 'bna', 'C02p43430' => 'bna', 'C02p64870' => 'bna', 'C04p27000' => 'bna', 'C04p53150' => 'bna', 'C05p07620' => 'bna', 'C07p25180' => 'bna', 'C07p61980' => 'bna', 'C07p62030' => 'bna', 'C07p62050' => 'bna', 'C08p12990' => 'bna', 'C08p39720' => 'bna', 'C09p11710' => 'bna', 'CAN.G1126.8' => 'can', 'CAN.G497.2' => 'can', 'CAN.G874.56' => 'can', 'CAN.G93.26' => 'can', 'CAN.G93.27' => 'can', 'CANSAT01G0856' => 'cansat', 'CANSAT25G3093' => 'cansat', 'CANSAT54G1051' => 'cansat', 'CARHR009550' => 'chi', 'CARHR054670' => 'chi', 'CARHR181780' => 'chi', 'CARHR184820' => 'chi', 'CARHR245180' => 'chi', 'CARHR281070' => 'chi', 'Carub.0001s0892' => 'cru', 'Carub.0002s0702' => 'cru', 'Carub.0004s0297' => 'cru', 'Carub.0007s0350' => 'cru', 'Carub.0008s0642' => 'cru', 'Carub.0008s2785' => 'cru', 'Ca_05733_v3' => 'car', 'Ca_13338_v3' => 'car', 'Ca_15093_v3' => 'car', 'Ca_22252_v3' => 'car', 'Ca_24829_v3' => 'car', 'Ca_30840_v3' => 'car', 'CBR_g54779' => 'cbr', 'Cc00_g27170' => 'ccan', 'Cc01_g15620' => 'ccan', 'Cc07_g05130' => 'ccan', 'Cc07_g05140' => 'ccan', 'CDE01G0183' => 'cde', 'CDE01G0300' => 'cde', 'CDE02G1710' => 'cde', 'CDE04G3122' => 'cde', 'CDE07G0371' => 'cde', 'CDE07G0423' => 'cde', 'Cfa004263' => 'cfa', 'Cfa011863' => 'cfa', 'Cfa018442' => 'cfa', 'Ciclev10001564m.g' => 'ccl', 'Ciclev10001767m.g' => 'ccl', 'Ciclev10025915m.g' => 'ccl', 'CiPaw.01G032200' => 'cil', 'CiPaw.02G014900' => 'cil', 'CiPaw.13G059400' => 'cil', 'CiPaw.14G047100' => 'cil', 'CiPaw.15G072800' => 'cil', 'CiPaw.16G004800' => 'cil', 'ClCG01G016210' => 'cla', 'ClCG02G013260' => 'cla', 'ClCG02G018920' => 'cla', 'ClCG05G019200' => 'cla', 'COL.COLO4_04841' => 'col', 'COL.COLO4_11234' => 'col', 'COL.COLO4_26374' => 'col', 'Cpa.g.sc2.247' => 'cpa', 'Cpa.g.sc2.248' => 'cpa', 'Cpa.g.sc2.249' => 'cpa', 'Cpa.g.sc3114.1' => 'cpa', 'Cpa.g.sc64.49' => 'cpa', 'Cre17.g729200' => 'cre', 'CsaV3_2G017450' => 'csa', 'CsaV3_3G044880' => 'csa', 'CsaV3_6G013270' => 'csa', 'CsaV3_6G042480' => 'csa', 'CSS0003093' => 'camsi', 'CSS0006136' => 'camsi', 'CSS0012137' => 'camsi', 'CSS0013076' => 'camsi', 'CSS0014123' => 'camsi', 'CSS0015053' => 'camsi', 'CSS0019175' => 'camsi', 'CSS0029309' => 'camsi', 'CSS0044454' => 'camsi', 'CSS0048854' => 'camsi', 'DCAR_010971' => 'dca', 'DCAR_012755' => 'dca', 'DCAR_018593' => 'dca', 'DCAR_019506' => 'dca', 'Dinv26796' => 'din', 'Dinv28767' => 'din', 'Dinv33655' => 'din', 'Dinv36043' => 'din', 'Dinv36044' => 'din', 'Dinv39383' => 'din', 'Dinv39945' => 'din', 'Duzib041G0096' => 'dzi', 'Duzib116G0479' => 'dzi', 'Duzib147G0514' => 'dzi', 'Duzib168G1078' => 'dzi', 'Duzib187G1337' => 'dzi', 'Duzib264G0759' => 'dzi', 'ECA232G0135' => 'eca', 'ECA232G3013' => 'eca', 'ECA236G0941' => 'eca', 'ECA238G3416' => 'eca', 'ECA248G3479' => 'eca', 'EL10Ac6g14888' => 'bvu', 'EL10Ac7g18228' => 'bvu', 'Eucgr.A00491' => 'egr', 'Eucgr.F01532' => 'egr', 'Eucgr.I02476' => 'egr', 'Eucgr.J01849' => 'egr', 'FAN11G0938' => 'fan', 'FAN15G2001' => 'fan', 'FAN16G3568' => 'fan', 'FAN19G2904' => 'fan', 'FAN20G2413' => 'fan', 'FAN21G0518' => 'fan', 'FAN23G1435' => 'fan', 'FAN25G0664' => 'fan', 'FAN26G1849' => 'fan', 'FAN27G0834' => 'fan', 'FAN28G2779' => 'fan', 'FvH4_1g14090' => 'fve', 'FvH4_2g40260' => 'fve', 'FvH4_3g41270' => 'fve', 'Glyma.01G178500' => 'gma', 'Glyma.02G059200' => 'gma', 'Glyma.02G238500' => 'gma', 'Glyma.11G063700' => 'gma', 'Glyma.11G202000' => 'gma', 'Glyma.14G077100' => 'gma', 'Glyma.14G207400' => 'gma', 'Glyma.16G142100' => 'gma', 'Glyma.17G248600' => 'gma', 'Glyma.17G248700' => 'gma', 'Glyma.18G048800' => 'gma', 'Gohir.1Z049538' => 'ghi', 'Gohir.A02G163000' => 'ghi', 'Gohir.A03G150300' => 'ghi', 'Gohir.A05G196600' => 'ghi', 'Gohir.A08G000004' => 'ghi', 'Gohir.A08G000040' => 'ghi', 'Gohir.A10G094200' => 'ghi', 'Gohir.A11G000500' => 'ghi', 'Gohir.A11G186900' => 'ghi', 'Gohir.D03G017300' => 'ghi', 'Gohir.D05G199700' => 'ghi', 'Gohir.D08G007600' => 'ghi', 'Gohir.D08G275700' => 'ghi', 'Gohir.D10G094000' => 'ghi', 'Gohir.D11G000132' => 'ghi', 'Gohir.D11G193400' => 'ghi', 'Gorai.003G017600' => 'gra', 'Gorai.004G000800' => 'gra', 'Gorai.006G275000' => 'gra', 'Gorai.007G000800' => 'gra', 'Gorai.007G000900' => 'gra', 'Gorai.007G206800' => 'gra', 'Gorai.007G379900' => 'gra', 'Gorai.009G205000' => 'gra', 'Gorai.011G103100' => 'gra', 'GSVIVG01009648001' => 'vvi', 'GSVIVG01019030001' => 'vvi', 'GSVIVG01024518001' => 'vvi', 'HanXRQChr01g0013531' => 'han', 'HanXRQChr02g0038891' => 'han', 'HanXRQChr07g0200251' => 'han', 'HanXRQChr07g0203841' => 'han', 'HanXRQChr09g0268461' => 'han', 'HanXRQChr11g0338191' => 'han', 'HanXRQChr12g0358251' => 'han', 'HanXRQChr14g0439501' => 'han', 'HanXRQChr14g0452261' => 'han', 'Haze_15138' => 'cav', 'Haze_17609' => 'cav', 'Haze_24499' => 'cav', 'Haze_24500' => 'cav', 'Hma1.2p1_0161F.1_g071950' => 'hma', 'Hma1.2p1_0203F.1_g086710' => 'hma', 'Hma1.2p1_0203F.1_g086715' => 'hma', 'Hma1.2p1_0413F.1_g147430' => 'hma', 'Hma1.2p1_0490F.1_g164230' => 'hma', 'Hma1.2p1_0652F.1_g195970' => 'hma', 'Hma1.2p1_1072F.1_g254170' => 'hma', 'Hma1.2p1_1852F.1_g305370' => 'hma', 'Hma1.2p1_1852F.1_g305380' => 'hma', 'HPP92_005016' => 'vpl', 'HPP92_007571' => 'vpl', 'HPP92_007701' => 'vpl', 'HPP92_007702' => 'vpl', 'HPP92_022670' => 'vpl', 'HPP92_022671' => 'vpl', 'HPP92_022672' => 'vpl', 'HPP92_022715' => 'vpl', 'HPP92_027302' => 'vpl', 'HPP92_027955' => 'vpl', 'Hund05687' => 'sun', 'Hund14132' => 'sun', 'Hund16573' => 'sun', 'Hund18619' => 'sun', 'Lalb_Chr05g0213011' => 'lal', 'Lalb_Chr05g0227741' => 'lal', 'Lalb_Chr05g0227751' => 'lal', 'Lalb_Chr09g0322671' => 'lal', 'Lalb_Chr10g0103921' => 'lal', 'Lalb_Chr14g0369071' => 'lal', 'Lalb_Chr15g0085511' => 'lal', 'Lalb_Chr16g0377971' => 'lal', 'Lalb_Chr16g0377981' => 'lal', 'Lalb_Chr23g0266691' => 'lal', 'Lj1A109T39' => 'lonja', 'Lj2A1107T72' => 'lonja', 'Lj2A894T8' => 'lonja', 'Lj2A895T21' => 'lonja', 'Lj2g0017527' => 'lja', 'Lj4A132T52' => 'lonja', 'Lj4A44T43' => 'lonja', 'Lj4g0027249' => 'lja', 'Lj5g0028013' => 'lja', 'Lj6g0015756' => 'lja', 'LjContig00141g0023042' => 'lja', 'Lsat_1_v5_gn_1_18041' => 'lsa', 'Lsat_1_v5_gn_2_86780' => 'lsa', 'Lsat_1_v5_gn_4_119901' => 'lsa', 'Lsat_1_v5_gn_4_175720' => 'lsa', 'Lsat_1_v5_gn_5_176860' => 'lsa', 'Lsat_1_v5_gn_8_98801' => 'lsa', 'Lsat_1_v5_gn_9_15501' => 'lsa', 'Manes.05G163400' => 'mes', 'Manes.12G098800' => 'mes', 'Manes.13G135900' => 'mes', 'Manes.18G029800' => 'mes', 'Manes.18G122100' => 'mes', 'Mapoly0135s0027' => 'mpo', 'MBI03_g16307_MAGBIO' => 'mbi', 'MBI16_g32005_MAGBIO' => 'mbi', 'MCO15G270' => 'mco', 'MD00G1134100' => 'mdo', 'MD02G1155000' => 'mdo', 'MD03G1046100' => 'mdo', 'MD08G1036100' => 'mdo', 'MD11G1048400' => 'mdo', 'MD15G1032500' => 'mdo', 'MD15G1269400' => 'mdo', 'MD15G1269500' => 'mdo', 'Medtr1g021955' => 'mtr', 'Medtr2091s0010' => 'mtr', 'Medtr3g063050' => 'mtr', 'Medtr5g019350' => 'mtr', 'Medtr5g076060' => 'mtr', 'Medtr8g078170' => 'mtr', 'MELO3C003881.2' => 'cme', 'MELO3C007491.2' => 'cme', 'MELO3C019599.2' => 'cme', 'MELO3C020941.2' => 'cme', 'Migut.C00686' => 'egut', 'Migut.D00788' => 'egut', 'Migut.H00524' => 'egut', 'Migut.K00855' => 'egut', 'Migut.N00702' => 'egut', 'MSTRG.12723' => 'ama', 'MSTRG.15414' => 'ama', 'MSTRG.17937' => 'ama', 'MSTRG.25145' => 'ama', 'MSTRG.2934' => 'ama', 'Nitab4.5_0000105g0380' => 'nta', 'Nitab4.5_0000539g0080' => 'nta', 'Nitab4.5_0001324g0080' => 'nta', 'Nitab4.5_0001446g0050' => 'nta', 'Nitab4.5_0001739g0060' => 'nta', 'Nitab4.5_0002108g0060' => 'nta', 'Nitab4.5_0002399g0030' => 'nta', 'Nitab4.5_0002481g0060' => 'nta', 'Nitab4.5_0002646g0030' => 'nta', 'Nitab4.5_0002902g0140' => 'nta', 'Nitab4.5_0003588g0050' => 'nta', 'Nitab4.5_0003641g0010' => 'nta', 'Nitab4.5_0006049g0010' => 'nta', 'Nitab4.5_0006512g0060' => 'nta', 'Nitab4.5_0007069g0010' => 'nta', 'Nitab4.5_0008255g0030' => 'nta', 'Nitab4.5_0011682g0010' => 'nta', 'Nn1g05107' => 'nnu', 'Nn4g25368' => 'nnu', 'Nn4g25369' => 'nnu', 'Nn5g26722' => 'nnu', 'Nn5g29494' => 'nnu', 'Nn5g30502' => 'nnu', 'Nn8g40774' => 'nnu', 'Oeu009605.1' => 'oeu', 'Oeu019082.1' => 'oeu', 'Oeu021801.1' => 'oeu', 'Oeu023905.1' => 'oeu', 'Oeu032883.1' => 'oeu', 'Oeu043853.1' => 'oeu', 'Oeu056197.1' => 'oeu', 'Oeu064697.1' => 'oeu', 'Os01g0817000' => 'osa', 'Os03g0233000' => 'osa', 'Os10g0501500' => 'osa', 'Os11g0124500' => 'osa', 'Os12g0122100' => 'osa', 'Peaxi162Scf00019g00128' => 'pax', 'Peaxi162Scf00057g00107' => 'pax', 'Peaxi162Scf00293g00512' => 'pax', 'Peaxi162Scf00390g00126' => 'pax', 'Peaxi162Scf00479g00009' => 'pax', 'Peaxi162Scf00535g00011' => 'pax', 'PGR031G3674' => 'pgr', 'PGR042G1896' => 'pgr', 'PGR083G0839' => 'pgr', 'PGR119G1397' => 'pgr', 'PGR119G2041' => 'pgr', 'PGSC0003DMG400001181' => 'stu', 'PGSC0003DMG400010090' => 'stu', 'PGSC0003DMG400016878' => 'stu', 'PGSC0003DMG400029176' => 'stu', 'PGSC0003DMG400029177' => 'stu', 'PGSC0003DMG401027676' => 'stu', 'PGSC0003DMG402027676' => 'stu', 'Phvul.001G016300' => 'pvu', 'Phvul.001G016400' => 'pvu', 'Phvul.001G030400' => 'pvu', 'Phvul.001G030500' => 'pvu', 'Phvul.003G251400' => 'pvu', 'Phvul.006G082700' => 'pvu', 'Phvul.008G243500' => 'pvu', 'Phvul.009G056000' => 'pvu', 'Potri.002G133400' => 'ptr', 'Potri.005G127800' => 'ptr', 'Potri.007G031400' => 'ptr', 'Potri.013G161300' => 'ptr', 'Potri.014G041000' => 'ptr', 'Potri.019G133400' => 'ptr', 'Pp3c16_6700' => 'ppa', 'Pp3c25_720' => 'ppa', 'Pp3c5_10220' => 'ppa', 'PRCOL_00003293' => 'pco', 'Prupe.1G383500' => 'ppe', 'Prupe.6G037400' => 'ppe', 'Prupe.7G148300' => 'ppe', 'Psat0s968g0040' => 'psa', 'Psat2g048840' => 'psa', 'Psat2g162400' => 'psa', 'Psat4g091040' => 'psa', 'Psat5g146200' => 'psa', 'PSO017G6200' => 'pso', 'PSO063G1891' => 'pso', 'PSO063G3691' => 'pso', 'PSO339G5552' => 'pso', 'PSO384G2249' => 'pso', 'PSO541G0227' => 'pso', 'PSO675G2797' => 'pso', 'PSO675G4890' => 'pso', 'QL01p023440' => 'qlo', 'QL02p007401' => 'qlo', 'QL06p044927' => 'qlo', 'QL07p000331' => 'qlo', 'RcHm_v2.0_Chr2g0102751' => 'rch', 'RcHm_v2.0_Chr5g0074071' => 'rch', 'RcHm_v2.0_Chr6g0300501' => 'rch', 'Rhsim01G0245600' => 'rsi', 'Rhsim06G0036500' => 'rsi', 'Rhsim07G0235800' => 'rsi', 'Rhsim08G0111300' => 'rsi', 'Rhsim13G0056600' => 'rsi', 'Sabra02G0104200' => 'sbr', 'Sabra05G0104400' => 'sbr', 'Sabra07G0027200' => 'sbr', 'Sabra13G0129000' => 'sbr', 'Sabra14G0029900' => 'sbr', 'Sabra19G0129600' => 'sbr', 'SalBow1G1055' => 'sbo', 'SalBow1G6006' => 'sbo', 'SalBow2G1722' => 'sbo', 'SalBow7G2200' => 'sbo', 'SalBow8G3302' => 'sbo', 'Sc02g0006530' => 'sci', 'Sc03g0000960' => 'sci', 'Sc15g0000920' => 'sci', 'Sed0006499' => 'sed', 'Sed0009029' => 'sed', 'Sed0009675' => 'sed', 'Sed0011982' => 'sed', 'Sed0015273' => 'sed', 'Sed0016551' => 'sed', 'Sed0020341' => 'sed', 'SEGI_05861' => 'sgi', 'SEGI_06807' => 'sgi', 'SEGI_12282' => 'sgi', 'SEGI_17235' => 'sgi', 'SEGI_21945' => 'sgi', 'SEGI_24284' => 'sgi', 'SEGI_28930' => 'sgi', 'SEGI_38452' => 'sgi', 'SEGI_38629' => 'sgi', 'SEGI_40238' => 'sgi', 'SGA_v2.0_scaffold120G33009' => 'sas', 'SGA_v2.0_scaffold150G36633' => 'sas', 'SGA_v2.0_scaffold158G37460' => 'sas', 'SGA_v2.0_scaffold158G37463' => 'sas', 'SGA_v2.0_scaffold204G41645' => 'sas', 'SGA_v2.0_scaffold48G18046' => 'sas', 'SGA_v2.0_scaffold77G25338' => 'sas', 'SHI19206' => 'shi', 'SMO340G0209' => 'smo', 'Solyc02g065550.4' => 'sly', 'Solyc02g089840.3' => 'sly', 'Solyc02g089850.3' => 'sly', 'Solyc03g044950.2' => 'sly', 'Solyc03g044960.2' => 'sly', 'Solyc04g079910.4' => 'sly', 'Solyc06g082780.4' => 'sly', 'Sopen02g015750' => 'spe', 'Sopen02g034540' => 'spe', 'Sopen03g009360' => 'spe', 'Sopen04g033480' => 'spe', 'Sopen06g034140' => 'spe', 'Sp1g08180' => 'spa', 'Sp2g05890' => 'spa', 'Sp2g06990' => 'spa', 'Sp2g30050' => 'spa', 'Sp4g02730' => 'spa', 'Sp7g34480' => 'spa', 'SpUn0028_0050' => 'spa', 'SpUn0029_0020' => 'spa', 'SpUn0261_0010' => 'spa', 'TAR381G0983' => 'tar', 'TAR533G0001' => 'tar', 'TAR533G0002' => 'tar', 'TAR628G0776' => 'tar', 'TAR636G2950' => 'tar', 'THA.LOC104799625' => 'tha', 'THA.LOC104803309' => 'tha', 'THA.LOC104806885' => 'tha', 'THA.LOC104807557' => 'tha', 'THA.LOC104809264' => 'tha', 'THA.LOC104814730' => 'tha', 'THA.LOC104815094' => 'tha', 'THA.LOC104816835' => 'tha', 'THA.LOC104819811' => 'tha', 'THA.LOC104820412' => 'tha', 'Thecc.01G042100' => 'tca', 'Thecc.08G022200' => 'tca', 'Thecc.09G366700' => 'tca', 'Thhalv10000226m.g' => 'esa', 'Thhalv10004608m.g' => 'esa', 'Thhalv10008337m.g' => 'esa', 'Thhalv10023609m.g' => 'esa', 'Thhalv10025544m.g' => 'esa', 'TPR.G15398' => 'tpr', 'TPR.G15738' => 'tpr', 'TPR.G20283' => 'tpr', 'TPR.G20286' => 'tpr', 'TPR.G23213' => 'tpr', 'TPR.G37305' => 'tpr', 'TWI09G0573' => 'twi', 'TWI12G0327' => 'twi', 'TWI53G1159' => 'twi', 'TWI56G0552' => 'twi', 'TWI73G0692' => 'twi', 'unitig_0.g428' => 'ugi', 'unitig_22.g5200' => 'ugi', 'unitig_22.g6779' => 'ugi', 'unitig_32.g10763' => 'ugi', 'unitig_32.g10764' => 'ugi', 'unitig_748.g8405' => 'ugi', 'vmacro02856' => 'vma', 'vmacro04500' => 'vma', 'vmacro04502' => 'vma', 'vmacro14661' => 'vma', 'vmacro17868' => 'vma', 'vmacro21612' => 'vma', 'VMungo0251G2288' => 'vmu', 'VMungo0540G2002' => 'vmu', 'VMungo0647G0688' => 'vmu', 'VMungo0647G1409' => 'vmu', 'VMungo1309G1523' => 'vmu', 'Zm00001eb009400' => 'zma', 'Zm00001eb044260' => 'zma', 'Zm00001eb149760' => 'zma', 'Zm00001eb163750' => 'zma', 'Zm00001eb369030' => 'zma', 'Zm00001eb399520' => 'zma' ) $gf_id = 'HOM05D000994' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000994' ) $data_identifier = 'HOM05D000994' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 4, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 5, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399520' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1